The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.
The unique characteristics of the Insight Journal include:
- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews
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- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews
Subscribe to the Kitware's newsletter
to receive news about open-source on your desk, it's free!
This paper presents code for reading contours from DICOM RT structure set files into binary labels. This is a common requirement for transferring expert manual segmentations from radiotherapy treatment planning software into external image analysis [...]
It is sometimes useful to be able to apply binary morphological operations, such as erosions and dilations, to labelled images in a fashion that preserves the labels. This article introduces a specialised class implementing parallel methods described in beare [...]
This document describes an ITK implementation of an interactive method for tracing curvilinear structures.
The basic tools provided in this framework are an oriented flux-based tubularity measure and a geodesic path
tracer that uses the fast marching [...]
Nonrigid image registration is an important, but resource demanding and time-consuming task in medical image analysis. This limits its application in time-critical clinical routines. In this report we explore acceleration of two time-consuming parts of a [...]
Primal/Dual Mesh with Application to Triangular/Simplex Mesh and Delaunay/Voronoi
Published in The Insight Journal
Published in The Insight Journal
This document describes an extension of ITK to handle both primal and dual meshes simultaneously. This paper describe in particular the data structure, an extension of itk::QuadEdgeMesh, a filter to compute and add to the the structure the dual of an existing [...]
We implemented the shape-based interpolation method described by Raya and Udupa in 1990 for three-dimensional images, and created two standalone filters using the Insight Toolkit ITK. The image to be interpolated must be a 3D binary image which represents an [...]
The Insight Segmentation and Registration Toolkit (ITK) previously provided a framework for parsing Extensible Markup Language (XML) documents using the Simple API for XML (SAX) framework. While this programming model is memory efficient, it places most of [...]
Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
Published in The Insight Journal
Published in The Insight Journal
This document describes a contribution to the Insight Toolkit intended to support the analysis of the principal components of data sets, optionally point data associated with the vertices of a mesh.
This paper is accompanied with the source code, input data, [...]
This document describes the workflow for unwarping echo planar MR images (EPI), in particular diffusion-weighted images, using an acquisition method with reversed phase encoding and the tools of the Computational Morphometry Toolkit (CMTK). This technique [...]
An implementation of the minimization of region-scalable fitting energy levelsets
Published in The Insight Journal
Published in The Insight Journal
Intensity inhomogeneities often occur in medical images, especially when using magnetic resonance imaging. In these images, the standard Chan-and-Vese levelset segmentation method may not work properly, as it assumes constant intensity distributions for [...]
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Publication of the Month
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| Shape-based Interpolation of a Set of 2D Slices
by Boydev C., Pasquier D., Derraz F., Peyrodie L., Taleb-Ahmed A., Thiran J.
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Issues Accepting Submissions
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| Systems and Architectures for Computer Assisted Interventions 2013 23 days |
| 2013 January-December 223 days |
| Computational Algorithms 2596 days |
| Medical Imaging and Computing 5931 days |
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